R for Bioinformatics
Master R for data analysis, visualization, and bioinformatics
R Basics & Operators
0%Variables, arithmetic, logical & relational operators
Final Project: Gene Expression Calculator
+50 XPBuild a script that performs arithmetic and logical operations on simulated gene expression data using only base R operators.
Tidyverse
0%Data manipulation with dplyr, tidyr, readr, purrr, and more
Final Project: TCGA Data Wrangling Pipeline
+50 XPClean and transform TCGA RNA-seq clinical data using dplyr and tidyr.
ggplot2
0%Create stunning data visualizations with the grammar of graphics
Final Project: Publication-Quality Figure Panel
+50 XPCreate a multi-panel figure for a manuscript using ggplot2.
Bioconductor & BiocManager
0%Install and use bioinformatics packages from Bioconductor
Final Project: Genomic Overlap Analysis
+50 XPFind overlaps between ChIP-seq peaks and gene promoters using GenomicRanges.
org.Hs.eg.db
0%Gene annotation, ID mapping, and functional analysis
Final Project: Gene Set Annotation Report
+50 XPAnnotate a DESeq2 result table with GO terms, pathways, and gene symbols using org.Hs.eg.db.
Dry Lab Research Projects
0%Applied R projects for computational biology and dry lab research
Final Project: Full RNA-seq Analysis
+100 XPEnd-to-end RNA-seq differential expression and pathway analysis.
DESeq2 & Differential Expression
0%Identify differentially expressed genes with rigorous statistics
Final Project: Complete DESeq2 Analysis
+75 XPEnd-to-end differential expression analysis from counts to biological interpretation.
R Markdown & Reproducible Reports
0%Create dynamic, reproducible analysis reports
Final Project: Reproducible RNA-seq Report
+75 XPCreate a parameterized, publication-quality RNA-seq analysis report.
Biostrings & Sequence Analysis
0%Analyze DNA, RNA, and protein sequences with Bioconductor
Final Project: Promoter Motif Scanner
+75 XPScan promoter sequences for transcription factor binding motifs using PWM matching.
Survival Analysis
0%Analyze time-to-event data with Kaplan-Meier and Cox models
Final Project: TCGA Survival Biomarker Study
+75 XPIdentify and validate survival biomarkers from TCGA clinical and expression data.